Courtot Lab Genome Informatics

Projects

Our team develops open source software and resources, in particular to support large scale data discovery and FAIRness.

ICGC-ARGO
ICGC-ARGO

Software infrastructure including the ICGC-ARGO data portal, dictionary and Data Access Control Office (DACO).

Overture
Overture

A collection of open-source, extendable solutions for big-data genomic science.

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VirusSeq
VirusSeq

A public-access Canadian COVID-19 viral sequence portal, built by OICR.

ICGC 25K
ICGC 25K

The ICGC Data Coordination Center software infrastructure including the ICGC data portal.

OHCRN
OHCRN

Enabling genomics and gene discovery for carriers of hereditary cancer syndromes.

HCMI
HCMI

A data portal for human tumor-derived culture models with associated genomic and clinical data.

IHCC
IHCC

The International 100K Cohorts Consortium (IHCC) a global platform for translational research.

EUCANCan
EUCANCan

A European-Canadian cancer network facilitating the efficient analysis, management and sharing of cancer genomic data.

NCI Genomic Data Commons
NCI Genomic Data Commons

US-based unified data repository that enables data sharing across cancer genomic studies.

Kids First
Kids First

Discovery platform for pediatric cancer and structural birth defect data.

Overture DMS
Overture DMS

Turnkey installation, configuration, and deployment of the Overture software.

Cancer Genome Collaboratory
Cancer Genome Collaboratory

ICGC cloud compute & storage cluster enhanced with custom-built software.

OncoJS
OncoJS

Javascript visualizations for cancer analytics.

Dockstore
Dockstore

An open platform for sharing Docker-based tools described with the Common Workflow Language used by the GA4GH.